-/*
- * divsufsort.c for libdivsufsort-lite
- * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved.
- *
- * Permission is hereby granted, free of charge, to any person
- * obtaining a copy of this software and associated documentation
- * files (the "Software"), to deal in the Software without
- * restriction, including without limitation the rights to use,
- * copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the
- * Software is furnished to do so, subject to the following
- * conditions:
- *
- * The above copyright notice and this permission notice shall be
- * included in all copies or substantial portions of the Software.
- *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
- * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
- * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
- * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
- * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
- * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
- * OTHER DEALINGS IN THE SOFTWARE.
- */
-
-#define assert(x)
-
-#include "wimlib/divsufsort.h"
-#include <stddef.h>
-
-/*- Constants -*/
-#if defined(ALPHABET_SIZE) && (ALPHABET_SIZE < 1)
-# undef ALPHABET_SIZE
-#endif
-#if !defined(ALPHABET_SIZE)
-# define ALPHABET_SIZE (256)
-#endif
-#define BUCKET_A_SIZE (ALPHABET_SIZE)
-#define BUCKET_B_SIZE (ALPHABET_SIZE * ALPHABET_SIZE)
-#if defined(SS_INSERTIONSORT_THRESHOLD)
-# if SS_INSERTIONSORT_THRESHOLD < 1
-# undef SS_INSERTIONSORT_THRESHOLD
-# define SS_INSERTIONSORT_THRESHOLD (1)
-# endif
-#else
-# define SS_INSERTIONSORT_THRESHOLD (8)
-#endif
-#if defined(SS_BLOCKSIZE)
-# if SS_BLOCKSIZE < 0
-# undef SS_BLOCKSIZE
-# define SS_BLOCKSIZE (0)
-# elif 32768 <= SS_BLOCKSIZE
-# undef SS_BLOCKSIZE
-# define SS_BLOCKSIZE (32767)
-# endif
-#else
-# define SS_BLOCKSIZE (1024)
-#endif
-/* minstacksize = log(SS_BLOCKSIZE) / log(3) * 2 */
-#if SS_BLOCKSIZE == 0
-# define SS_MISORT_STACKSIZE (96)
-#elif SS_BLOCKSIZE <= 4096
-# define SS_MISORT_STACKSIZE (16)
-#else
-# define SS_MISORT_STACKSIZE (24)
-#endif
-#define SS_SMERGE_STACKSIZE (32)
-#define TR_INSERTIONSORT_THRESHOLD (8)
-#define TR_STACKSIZE (64)
-
-
-/*- Macros -*/
-#ifndef SWAP
-# define SWAP(_a, _b) do { t = (_a); (_a) = (_b); (_b) = t; } while(0)
-#endif /* SWAP */
-#ifndef MIN
-# define MIN(_a, _b) (((_a) < (_b)) ? (_a) : (_b))
-#endif /* MIN */
-#ifndef MAX
-# define MAX(_a, _b) (((_a) > (_b)) ? (_a) : (_b))
-#endif /* MAX */
-#define STACK_PUSH(_a, _b, _c, _d)\
- do {\
- assert(ssize < STACK_SIZE);\
- stack[ssize].a = (_a), stack[ssize].b = (_b),\
- stack[ssize].c = (_c), stack[ssize++].d = (_d);\
- } while(0)
-#define STACK_PUSH5(_a, _b, _c, _d, _e)\
- do {\
- assert(ssize < STACK_SIZE);\
- stack[ssize].a = (_a), stack[ssize].b = (_b),\
- stack[ssize].c = (_c), stack[ssize].d = (_d), stack[ssize++].e = (_e);\
- } while(0)
-#define STACK_POP(_a, _b, _c, _d)\
- do {\
- assert(0 <= ssize);\
- if(ssize == 0) { return; }\
- (_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
- (_c) = stack[ssize].c, (_d) = stack[ssize].d;\
- } while(0)
-#define STACK_POP5(_a, _b, _c, _d, _e)\
- do {\
- assert(0 <= ssize);\
- if(ssize == 0) { return; }\
- (_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
- (_c) = stack[ssize].c, (_d) = stack[ssize].d, (_e) = stack[ssize].e;\
- } while(0)
-#define BUCKET_A(_c0) bucket_A[(_c0)]
-#if ALPHABET_SIZE == 256
-#define BUCKET_B(_c0, _c1) (bucket_B[((_c1) << 8) | (_c0)])
-#define BUCKET_BSTAR(_c0, _c1) (bucket_B[((_c0) << 8) | (_c1)])
-#else
-#define BUCKET_B(_c0, _c1) (bucket_B[(_c1) * ALPHABET_SIZE + (_c0)])
-#define BUCKET_BSTAR(_c0, _c1) (bucket_B[(_c0) * ALPHABET_SIZE + (_c1)])
-#endif
-
-
-/*- Private Functions -*/
-
-static const int lg_table[256]= {
- -1,0,1,1,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
- 5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,
- 6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
- 6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
- 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
- 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
- 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
- 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7
-};
-
-#if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
-
-static inline
-int
-ss_ilg(int n) {
-#if SS_BLOCKSIZE == 0
- return (n & 0xffff0000) ?
- ((n & 0xff000000) ?
- 24 + lg_table[(n >> 24) & 0xff] :
- 16 + lg_table[(n >> 16) & 0xff]) :
- ((n & 0x0000ff00) ?
- 8 + lg_table[(n >> 8) & 0xff] :
- 0 + lg_table[(n >> 0) & 0xff]);
-#elif SS_BLOCKSIZE < 256
- return lg_table[n];
-#else
- return (n & 0xff00) ?
- 8 + lg_table[(n >> 8) & 0xff] :
- 0 + lg_table[(n >> 0) & 0xff];
-#endif
-}
-
-#endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
-
-#if SS_BLOCKSIZE != 0
-
-static const int sqq_table[256] = {
- 0, 16, 22, 27, 32, 35, 39, 42, 45, 48, 50, 53, 55, 57, 59, 61,
- 64, 65, 67, 69, 71, 73, 75, 76, 78, 80, 81, 83, 84, 86, 87, 89,
- 90, 91, 93, 94, 96, 97, 98, 99, 101, 102, 103, 104, 106, 107, 108, 109,
-110, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126,
-128, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,
-143, 144, 144, 145, 146, 147, 148, 149, 150, 150, 151, 152, 153, 154, 155, 155,
-156, 157, 158, 159, 160, 160, 161, 162, 163, 163, 164, 165, 166, 167, 167, 168,
-169, 170, 170, 171, 172, 173, 173, 174, 175, 176, 176, 177, 178, 178, 179, 180,
-181, 181, 182, 183, 183, 184, 185, 185, 186, 187, 187, 188, 189, 189, 190, 191,
-192, 192, 193, 193, 194, 195, 195, 196, 197, 197, 198, 199, 199, 200, 201, 201,
-202, 203, 203, 204, 204, 205, 206, 206, 207, 208, 208, 209, 209, 210, 211, 211,
-212, 212, 213, 214, 214, 215, 215, 216, 217, 217, 218, 218, 219, 219, 220, 221,
-221, 222, 222, 223, 224, 224, 225, 225, 226, 226, 227, 227, 228, 229, 229, 230,
-230, 231, 231, 232, 232, 233, 234, 234, 235, 235, 236, 236, 237, 237, 238, 238,
-239, 240, 240, 241, 241, 242, 242, 243, 243, 244, 244, 245, 245, 246, 246, 247,
-247, 248, 248, 249, 249, 250, 250, 251, 251, 252, 252, 253, 253, 254, 254, 255
-};
-
-static inline
-int
-ss_isqrt(int x) {
- int y, e;
-
- if(x >= (SS_BLOCKSIZE * SS_BLOCKSIZE)) { return SS_BLOCKSIZE; }
- e = (x & 0xffff0000) ?
- ((x & 0xff000000) ?
- 24 + lg_table[(x >> 24) & 0xff] :
- 16 + lg_table[(x >> 16) & 0xff]) :
- ((x & 0x0000ff00) ?
- 8 + lg_table[(x >> 8) & 0xff] :
- 0 + lg_table[(x >> 0) & 0xff]);
-
- if(e >= 16) {
- y = sqq_table[x >> ((e - 6) - (e & 1))] << ((e >> 1) - 7);
- if(e >= 24) { y = (y + 1 + x / y) >> 1; }
- y = (y + 1 + x / y) >> 1;
- } else if(e >= 8) {
- y = (sqq_table[x >> ((e - 6) - (e & 1))] >> (7 - (e >> 1))) + 1;
- } else {
- return sqq_table[x] >> 4;
- }
-
- return (x < (y * y)) ? y - 1 : y;
-}
-
-#endif /* SS_BLOCKSIZE != 0 */
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Compares two suffixes. */
-static inline
-int
-ss_compare(const unsigned char *T,
- const int *p1, const int *p2,
- int depth) {
- const unsigned char *U1, *U2, *U1n, *U2n;
-
- for(U1 = T + depth + *p1,
- U2 = T + depth + *p2,
- U1n = T + *(p1 + 1) + 2,
- U2n = T + *(p2 + 1) + 2;
- (U1 < U1n) && (U2 < U2n) && (*U1 == *U2);
- ++U1, ++U2) {
- }
-
- return U1 < U1n ?
- (U2 < U2n ? *U1 - *U2 : 1) :
- (U2 < U2n ? -1 : 0);
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-#if (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1)
-
-/* Insertionsort for small size groups */
-static
-void
-ss_insertionsort(const unsigned char *T, const int *PA,
- int *first, int *last, int depth) {
- int *i, *j;
- int t;
- int r;
-
- for(i = last - 2; first <= i; --i) {
- for(t = *i, j = i + 1; 0 < (r = ss_compare(T, PA + t, PA + *j, depth));) {
- do { *(j - 1) = *j; } while((++j < last) && (*j < 0));
- if(last <= j) { break; }
- }
- if(r == 0) { *j = ~*j; }
- *(j - 1) = t;
- }
-}
-
-#endif /* (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1) */
-
-
-/*---------------------------------------------------------------------------*/
-
-#if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
-
-static inline
-void
-ss_fixdown(const unsigned char *Td, const int *PA,
- int *SA, int i, int size) {
- int j, k;
- int v;
- int c, d, e;
-
- for(v = SA[i], c = Td[PA[v]]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
- d = Td[PA[SA[k = j++]]];
- if(d < (e = Td[PA[SA[j]]])) { k = j; d = e; }
- if(d <= c) { break; }
- }
- SA[i] = v;
-}
-
-/* Simple top-down heapsort. */
-static
-void
-ss_heapsort(const unsigned char *Td, const int *PA, int *SA, int size) {
- int i, m;
- int t;
-
- m = size;
- if((size % 2) == 0) {
- m--;
- if(Td[PA[SA[m / 2]]] < Td[PA[SA[m]]]) { SWAP(SA[m], SA[m / 2]); }
- }
-
- for(i = m / 2 - 1; 0 <= i; --i) { ss_fixdown(Td, PA, SA, i, m); }
- if((size % 2) == 0) { SWAP(SA[0], SA[m]); ss_fixdown(Td, PA, SA, 0, m); }
- for(i = m - 1; 0 < i; --i) {
- t = SA[0], SA[0] = SA[i];
- ss_fixdown(Td, PA, SA, 0, i);
- SA[i] = t;
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Returns the median of three elements. */
-static inline
-int *
-ss_median3(const unsigned char *Td, const int *PA,
- int *v1, int *v2, int *v3) {
- int *t;
- if(Td[PA[*v1]] > Td[PA[*v2]]) { SWAP(v1, v2); }
- if(Td[PA[*v2]] > Td[PA[*v3]]) {
- if(Td[PA[*v1]] > Td[PA[*v3]]) { return v1; }
- else { return v3; }
- }
- return v2;
-}
-
-/* Returns the median of five elements. */
-static inline
-int *
-ss_median5(const unsigned char *Td, const int *PA,
- int *v1, int *v2, int *v3, int *v4, int *v5) {
- int *t;
- if(Td[PA[*v2]] > Td[PA[*v3]]) { SWAP(v2, v3); }
- if(Td[PA[*v4]] > Td[PA[*v5]]) { SWAP(v4, v5); }
- if(Td[PA[*v2]] > Td[PA[*v4]]) { SWAP(v2, v4); SWAP(v3, v5); }
- if(Td[PA[*v1]] > Td[PA[*v3]]) { SWAP(v1, v3); }
- if(Td[PA[*v1]] > Td[PA[*v4]]) { SWAP(v1, v4); SWAP(v3, v5); }
- if(Td[PA[*v3]] > Td[PA[*v4]]) { return v4; }
- return v3;
-}
-
-/* Returns the pivot element. */
-static inline
-int *
-ss_pivot(const unsigned char *Td, const int *PA, int *first, int *last) {
- int *middle;
- int t;
-
- t = last - first;
- middle = first + t / 2;
-
- if(t <= 512) {
- if(t <= 32) {
- return ss_median3(Td, PA, first, middle, last - 1);
- } else {
- t >>= 2;
- return ss_median5(Td, PA, first, first + t, middle, last - 1 - t, last - 1);
- }
- }
- t >>= 3;
- first = ss_median3(Td, PA, first, first + t, first + (t << 1));
- middle = ss_median3(Td, PA, middle - t, middle, middle + t);
- last = ss_median3(Td, PA, last - 1 - (t << 1), last - 1 - t, last - 1);
- return ss_median3(Td, PA, first, middle, last);
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Binary partition for substrings. */
-static inline
-int *
-ss_partition(const int *PA,
- int *first, int *last, int depth) {
- int *a, *b;
- int t;
- for(a = first - 1, b = last;;) {
- for(; (++a < b) && ((PA[*a] + depth) >= (PA[*a + 1] + 1));) { *a = ~*a; }
- for(; (a < --b) && ((PA[*b] + depth) < (PA[*b + 1] + 1));) { }
- if(b <= a) { break; }
- t = ~*b;
- *b = *a;
- *a = t;
- }
- if(first < a) { *first = ~*first; }
- return a;
-}
-
-/* Multikey introsort for medium size groups. */
-static
-void
-ss_mintrosort(const unsigned char *T, const int *PA,
- int *first, int *last,
- int depth) {
-#define STACK_SIZE SS_MISORT_STACKSIZE
- struct { int *a, *b, c; int d; } stack[STACK_SIZE];
- const unsigned char *Td;
- int *a, *b, *c, *d, *e, *f;
- int s, t;
- int ssize;
- int limit;
- int v, x = 0;
-
- for(ssize = 0, limit = ss_ilg(last - first);;) {
-
- if((last - first) <= SS_INSERTIONSORT_THRESHOLD) {
-#if 1 < SS_INSERTIONSORT_THRESHOLD
- if(1 < (last - first)) { ss_insertionsort(T, PA, first, last, depth); }
-#endif
- STACK_POP(first, last, depth, limit);
- continue;
- }
-
- Td = T + depth;
- if(limit-- == 0) { ss_heapsort(Td, PA, first, last - first); }
- if(limit < 0) {
- for(a = first + 1, v = Td[PA[*first]]; a < last; ++a) {
- if((x = Td[PA[*a]]) != v) {
- if(1 < (a - first)) { break; }
- v = x;
- first = a;
- }
- }
- if(Td[PA[*first] - 1] < v) {
- first = ss_partition(PA, first, a, depth);
- }
- if((a - first) <= (last - a)) {
- if(1 < (a - first)) {
- STACK_PUSH(a, last, depth, -1);
- last = a, depth += 1, limit = ss_ilg(a - first);
- } else {
- first = a, limit = -1;
- }
- } else {
- if(1 < (last - a)) {
- STACK_PUSH(first, a, depth + 1, ss_ilg(a - first));
- first = a, limit = -1;
- } else {
- last = a, depth += 1, limit = ss_ilg(a - first);
- }
- }
- continue;
- }
-
- /* choose pivot */
- a = ss_pivot(Td, PA, first, last);
- v = Td[PA[*a]];
- SWAP(*first, *a);
-
- /* partition */
- for(b = first; (++b < last) && ((x = Td[PA[*b]]) == v);) { }
- if(((a = b) < last) && (x < v)) {
- for(; (++b < last) && ((x = Td[PA[*b]]) <= v);) {
- if(x == v) { SWAP(*b, *a); ++a; }
- }
- }
- for(c = last; (b < --c) && ((x = Td[PA[*c]]) == v);) { }
- if((b < (d = c)) && (x > v)) {
- for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
- if(x == v) { SWAP(*c, *d); --d; }
- }
- }
- for(; b < c;) {
- SWAP(*b, *c);
- for(; (++b < c) && ((x = Td[PA[*b]]) <= v);) {
- if(x == v) { SWAP(*b, *a); ++a; }
- }
- for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
- if(x == v) { SWAP(*c, *d); --d; }
- }
- }
-
- if(a <= d) {
- c = b - 1;
-
- if((s = a - first) > (t = b - a)) { s = t; }
- for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
- if((s = d - c) > (t = last - d - 1)) { s = t; }
- for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
-
- a = first + (b - a), c = last - (d - c);
- b = (v <= Td[PA[*a] - 1]) ? a : ss_partition(PA, a, c, depth);
-
- if((a - first) <= (last - c)) {
- if((last - c) <= (c - b)) {
- STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
- STACK_PUSH(c, last, depth, limit);
- last = a;
- } else if((a - first) <= (c - b)) {
- STACK_PUSH(c, last, depth, limit);
- STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
- last = a;
- } else {
- STACK_PUSH(c, last, depth, limit);
- STACK_PUSH(first, a, depth, limit);
- first = b, last = c, depth += 1, limit = ss_ilg(c - b);
- }
- } else {
- if((a - first) <= (c - b)) {
- STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
- STACK_PUSH(first, a, depth, limit);
- first = c;
- } else if((last - c) <= (c - b)) {
- STACK_PUSH(first, a, depth, limit);
- STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
- first = c;
- } else {
- STACK_PUSH(first, a, depth, limit);
- STACK_PUSH(c, last, depth, limit);
- first = b, last = c, depth += 1, limit = ss_ilg(c - b);
- }
- }
- } else {
- limit += 1;
- if(Td[PA[*first] - 1] < v) {
- first = ss_partition(PA, first, last, depth);
- limit = ss_ilg(last - first);
- }
- depth += 1;
- }
- }
-#undef STACK_SIZE
-}
-
-#endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
-
-
-/*---------------------------------------------------------------------------*/
-
-#if SS_BLOCKSIZE != 0
-
-static inline
-void
-ss_blockswap(int *a, int *b, int n) {
- int t;
- for(; 0 < n; --n, ++a, ++b) {
- t = *a, *a = *b, *b = t;
- }
-}
-
-static inline
-void
-ss_rotate(int *first, int *middle, int *last) {
- int *a, *b, t;
- int l, r;
- l = middle - first, r = last - middle;
- for(; (0 < l) && (0 < r);) {
- if(l == r) { ss_blockswap(first, middle, l); break; }
- if(l < r) {
- a = last - 1, b = middle - 1;
- t = *a;
- do {
- *a-- = *b, *b-- = *a;
- if(b < first) {
- *a = t;
- last = a;
- if((r -= l + 1) <= l) { break; }
- a -= 1, b = middle - 1;
- t = *a;
- }
- } while(1);
- } else {
- a = first, b = middle;
- t = *a;
- do {
- *a++ = *b, *b++ = *a;
- if(last <= b) {
- *a = t;
- first = a + 1;
- if((l -= r + 1) <= r) { break; }
- a += 1, b = middle;
- t = *a;
- }
- } while(1);
- }
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-static
-void
-ss_inplacemerge(const unsigned char *T, const int *PA,
- int *first, int *middle, int *last,
- int depth) {
- const int *p;
- int *a, *b;
- int len, half;
- int q, r;
- int x;
-
- for(;;) {
- if(*(last - 1) < 0) { x = 1; p = PA + ~*(last - 1); }
- else { x = 0; p = PA + *(last - 1); }
- for(a = first, len = middle - first, half = len >> 1, r = -1;
- 0 < len;
- len = half, half >>= 1) {
- b = a + half;
- q = ss_compare(T, PA + ((0 <= *b) ? *b : ~*b), p, depth);
- if(q < 0) {
- a = b + 1;
- half -= (len & 1) ^ 1;
- } else {
- r = q;
- }
- }
- if(a < middle) {
- if(r == 0) { *a = ~*a; }
- ss_rotate(a, middle, last);
- last -= middle - a;
- middle = a;
- if(first == middle) { break; }
- }
- --last;
- if(x != 0) { while(*--last < 0) { } }
- if(middle == last) { break; }
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Merge-forward with internal buffer. */
-static
-void
-ss_mergeforward(const unsigned char *T, const int *PA,
- int *first, int *middle, int *last,
- int *buf, int depth) {
- int *a, *b, *c, *bufend;
- int t;
- int r;
-
- bufend = buf + (middle - first) - 1;
- ss_blockswap(buf, first, middle - first);
-
- for(t = *(a = first), b = buf, c = middle;;) {
- r = ss_compare(T, PA + *b, PA + *c, depth);
- if(r < 0) {
- do {
- *a++ = *b;
- if(bufend <= b) { *bufend = t; return; }
- *b++ = *a;
- } while(*b < 0);
- } else if(r > 0) {
- do {
- *a++ = *c, *c++ = *a;
- if(last <= c) {
- while(b < bufend) { *a++ = *b, *b++ = *a; }
- *a = *b, *b = t;
- return;
- }
- } while(*c < 0);
- } else {
- *c = ~*c;
- do {
- *a++ = *b;
- if(bufend <= b) { *bufend = t; return; }
- *b++ = *a;
- } while(*b < 0);
-
- do {
- *a++ = *c, *c++ = *a;
- if(last <= c) {
- while(b < bufend) { *a++ = *b, *b++ = *a; }
- *a = *b, *b = t;
- return;
- }
- } while(*c < 0);
- }
- }
-}
-
-/* Merge-backward with internal buffer. */
-static
-void
-ss_mergebackward(const unsigned char *T, const int *PA,
- int *first, int *middle, int *last,
- int *buf, int depth) {
- const int *p1, *p2;
- int *a, *b, *c, *bufend;
- int t;
- int r;
- int x;
-
- bufend = buf + (last - middle) - 1;
- ss_blockswap(buf, middle, last - middle);
-
- x = 0;
- if(*bufend < 0) { p1 = PA + ~*bufend; x |= 1; }
- else { p1 = PA + *bufend; }
- if(*(middle - 1) < 0) { p2 = PA + ~*(middle - 1); x |= 2; }
- else { p2 = PA + *(middle - 1); }
- for(t = *(a = last - 1), b = bufend, c = middle - 1;;) {
- r = ss_compare(T, p1, p2, depth);
- if(0 < r) {
- if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
- *a-- = *b;
- if(b <= buf) { *buf = t; break; }
- *b-- = *a;
- if(*b < 0) { p1 = PA + ~*b; x |= 1; }
- else { p1 = PA + *b; }
- } else if(r < 0) {
- if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
- *a-- = *c, *c-- = *a;
- if(c < first) {
- while(buf < b) { *a-- = *b, *b-- = *a; }
- *a = *b, *b = t;
- break;
- }
- if(*c < 0) { p2 = PA + ~*c; x |= 2; }
- else { p2 = PA + *c; }
- } else {
- if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
- *a-- = ~*b;
- if(b <= buf) { *buf = t; break; }
- *b-- = *a;
- if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
- *a-- = *c, *c-- = *a;
- if(c < first) {
- while(buf < b) { *a-- = *b, *b-- = *a; }
- *a = *b, *b = t;
- break;
- }
- if(*b < 0) { p1 = PA + ~*b; x |= 1; }
- else { p1 = PA + *b; }
- if(*c < 0) { p2 = PA + ~*c; x |= 2; }
- else { p2 = PA + *c; }
- }
- }
-}
-
-/* D&C based merge. */
-static
-void
-ss_swapmerge(const unsigned char *T, const int *PA,
- int *first, int *middle, int *last,
- int *buf, int bufsize, int depth) {
-#define STACK_SIZE SS_SMERGE_STACKSIZE
-#define GETIDX(a) ((0 <= (a)) ? (a) : (~(a)))
-#define MERGE_CHECK(a, b, c)\
- do {\
- if(((c) & 1) ||\
- (((c) & 2) && (ss_compare(T, PA + GETIDX(*((a) - 1)), PA + *(a), depth) == 0))) {\
- *(a) = ~*(a);\
- }\
- if(((c) & 4) && ((ss_compare(T, PA + GETIDX(*((b) - 1)), PA + *(b), depth) == 0))) {\
- *(b) = ~*(b);\
- }\
- } while(0)
- struct { int *a, *b, *c; int d; } stack[STACK_SIZE];
- int *l, *r, *lm, *rm;
- int m, len, half;
- int ssize;
- int check, next;
-
- for(check = 0, ssize = 0;;) {
- if((last - middle) <= bufsize) {
- if((first < middle) && (middle < last)) {
- ss_mergebackward(T, PA, first, middle, last, buf, depth);
- }
- MERGE_CHECK(first, last, check);
- STACK_POP(first, middle, last, check);
- continue;
- }
-
- if((middle - first) <= bufsize) {
- if(first < middle) {
- ss_mergeforward(T, PA, first, middle, last, buf, depth);
- }
- MERGE_CHECK(first, last, check);
- STACK_POP(first, middle, last, check);
- continue;
- }
-
- for(m = 0, len = MIN(middle - first, last - middle), half = len >> 1;
- 0 < len;
- len = half, half >>= 1) {
- if(ss_compare(T, PA + GETIDX(*(middle + m + half)),
- PA + GETIDX(*(middle - m - half - 1)), depth) < 0) {
- m += half + 1;
- half -= (len & 1) ^ 1;
- }
- }
-
- if(0 < m) {
- lm = middle - m, rm = middle + m;
- ss_blockswap(lm, middle, m);
- l = r = middle, next = 0;
- if(rm < last) {
- if(*rm < 0) {
- *rm = ~*rm;
- if(first < lm) { for(; *--l < 0;) { } next |= 4; }
- next |= 1;
- } else if(first < lm) {
- for(; *r < 0; ++r) { }
- next |= 2;
- }
- }
-
- if((l - first) <= (last - r)) {
- STACK_PUSH(r, rm, last, (next & 3) | (check & 4));
- middle = lm, last = l, check = (check & 3) | (next & 4);
- } else {
- if((next & 2) && (r == middle)) { next ^= 6; }
- STACK_PUSH(first, lm, l, (check & 3) | (next & 4));
- first = r, middle = rm, check = (next & 3) | (check & 4);
- }
- } else {
- if(ss_compare(T, PA + GETIDX(*(middle - 1)), PA + *middle, depth) == 0) {
- *middle = ~*middle;
- }
- MERGE_CHECK(first, last, check);
- STACK_POP(first, middle, last, check);
- }
- }
-#undef STACK_SIZE
-}
-
-#endif /* SS_BLOCKSIZE != 0 */
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Substring sort */
-static
-void
-sssort(const unsigned char *T, const int *PA,
- int *first, int *last,
- int *buf, int bufsize,
- int depth, int n, int lastsuffix) {
- int *a;
-#if SS_BLOCKSIZE != 0
- int *b, *middle, *curbuf;
- int j, k, curbufsize, limit;
-#endif
- int i;
-
- if(lastsuffix != 0) { ++first; }
-
-#if SS_BLOCKSIZE == 0
- ss_mintrosort(T, PA, first, last, depth);
-#else
- if((bufsize < SS_BLOCKSIZE) &&
- (bufsize < (last - first)) &&
- (bufsize < (limit = ss_isqrt(last - first)))) {
- if(SS_BLOCKSIZE < limit) { limit = SS_BLOCKSIZE; }
- buf = middle = last - limit, bufsize = limit;
- } else {
- middle = last, limit = 0;
- }
- for(a = first, i = 0; SS_BLOCKSIZE < (middle - a); a += SS_BLOCKSIZE, ++i) {
-#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
- ss_mintrosort(T, PA, a, a + SS_BLOCKSIZE, depth);
-#elif 1 < SS_BLOCKSIZE
- ss_insertionsort(T, PA, a, a + SS_BLOCKSIZE, depth);
-#endif
- curbufsize = last - (a + SS_BLOCKSIZE);
- curbuf = a + SS_BLOCKSIZE;
- if(curbufsize <= bufsize) { curbufsize = bufsize, curbuf = buf; }
- for(b = a, k = SS_BLOCKSIZE, j = i; j & 1; b -= k, k <<= 1, j >>= 1) {
- ss_swapmerge(T, PA, b - k, b, b + k, curbuf, curbufsize, depth);
- }
- }
-#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
- ss_mintrosort(T, PA, a, middle, depth);
-#elif 1 < SS_BLOCKSIZE
- ss_insertionsort(T, PA, a, middle, depth);
-#endif
- for(k = SS_BLOCKSIZE; i != 0; k <<= 1, i >>= 1) {
- if(i & 1) {
- ss_swapmerge(T, PA, a - k, a, middle, buf, bufsize, depth);
- a -= k;
- }
- }
- if(limit != 0) {
-#if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
- ss_mintrosort(T, PA, middle, last, depth);
-#elif 1 < SS_BLOCKSIZE
- ss_insertionsort(T, PA, middle, last, depth);
-#endif
- ss_inplacemerge(T, PA, first, middle, last, depth);
- }
-#endif
-
- if(lastsuffix != 0) {
- /* Insert last type B* suffix. */
- int PAi[2]; PAi[0] = PA[*(first - 1)], PAi[1] = n - 2;
- for(a = first, i = *(first - 1);
- (a < last) && ((*a < 0) || (0 < ss_compare(T, &(PAi[0]), PA + *a, depth)));
- ++a) {
- *(a - 1) = *a;
- }
- *(a - 1) = i;
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-static inline
-int
-tr_ilg(int n) {
- return (n & 0xffff0000) ?
- ((n & 0xff000000) ?
- 24 + lg_table[(n >> 24) & 0xff] :
- 16 + lg_table[(n >> 16) & 0xff]) :
- ((n & 0x0000ff00) ?
- 8 + lg_table[(n >> 8) & 0xff] :
- 0 + lg_table[(n >> 0) & 0xff]);
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Simple insertionsort for small size groups. */
-static
-void
-tr_insertionsort(const int *ISAd, int *first, int *last) {
- int *a, *b;
- int t, r;
-
- for(a = first + 1; a < last; ++a) {
- for(t = *a, b = a - 1; 0 > (r = ISAd[t] - ISAd[*b]);) {
- do { *(b + 1) = *b; } while((first <= --b) && (*b < 0));
- if(b < first) { break; }
- }
- if(r == 0) { *b = ~*b; }
- *(b + 1) = t;
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-static inline
-void
-tr_fixdown(const int *ISAd, int *SA, int i, int size) {
- int j, k;
- int v;
- int c, d, e;
-
- for(v = SA[i], c = ISAd[v]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
- d = ISAd[SA[k = j++]];
- if(d < (e = ISAd[SA[j]])) { k = j; d = e; }
- if(d <= c) { break; }
- }
- SA[i] = v;
-}
-
-/* Simple top-down heapsort. */
-static
-void
-tr_heapsort(const int *ISAd, int *SA, int size) {
- int i, m;
- int t;
-
- m = size;
- if((size % 2) == 0) {
- m--;
- if(ISAd[SA[m / 2]] < ISAd[SA[m]]) { SWAP(SA[m], SA[m / 2]); }
- }
-
- for(i = m / 2 - 1; 0 <= i; --i) { tr_fixdown(ISAd, SA, i, m); }
- if((size % 2) == 0) { SWAP(SA[0], SA[m]); tr_fixdown(ISAd, SA, 0, m); }
- for(i = m - 1; 0 < i; --i) {
- t = SA[0], SA[0] = SA[i];
- tr_fixdown(ISAd, SA, 0, i);
- SA[i] = t;
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Returns the median of three elements. */
-static inline
-int *
-tr_median3(const int *ISAd, int *v1, int *v2, int *v3) {
- int *t;
- if(ISAd[*v1] > ISAd[*v2]) { SWAP(v1, v2); }
- if(ISAd[*v2] > ISAd[*v3]) {
- if(ISAd[*v1] > ISAd[*v3]) { return v1; }
- else { return v3; }
- }
- return v2;
-}
-
-/* Returns the median of five elements. */
-static inline
-int *
-tr_median5(const int *ISAd,
- int *v1, int *v2, int *v3, int *v4, int *v5) {
- int *t;
- if(ISAd[*v2] > ISAd[*v3]) { SWAP(v2, v3); }
- if(ISAd[*v4] > ISAd[*v5]) { SWAP(v4, v5); }
- if(ISAd[*v2] > ISAd[*v4]) { SWAP(v2, v4); SWAP(v3, v5); }
- if(ISAd[*v1] > ISAd[*v3]) { SWAP(v1, v3); }
- if(ISAd[*v1] > ISAd[*v4]) { SWAP(v1, v4); SWAP(v3, v5); }
- if(ISAd[*v3] > ISAd[*v4]) { return v4; }
- return v3;
-}
-
-/* Returns the pivot element. */
-static inline
-int *
-tr_pivot(const int *ISAd, int *first, int *last) {
- int *middle;
- int t;
-
- t = last - first;
- middle = first + t / 2;
-
- if(t <= 512) {
- if(t <= 32) {
- return tr_median3(ISAd, first, middle, last - 1);
- } else {
- t >>= 2;
- return tr_median5(ISAd, first, first + t, middle, last - 1 - t, last - 1);
- }
- }
- t >>= 3;
- first = tr_median3(ISAd, first, first + t, first + (t << 1));
- middle = tr_median3(ISAd, middle - t, middle, middle + t);
- last = tr_median3(ISAd, last - 1 - (t << 1), last - 1 - t, last - 1);
- return tr_median3(ISAd, first, middle, last);
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-typedef struct _trbudget_t trbudget_t;
-struct _trbudget_t {
- int chance;
- int remain;
- int incval;
- int count;
-};
-
-static inline
-void
-trbudget_init(trbudget_t *budget, int chance, int incval) {
- budget->chance = chance;
- budget->remain = budget->incval = incval;
-}
-
-static inline
-int
-trbudget_check(trbudget_t *budget, int size) {
- if(size <= budget->remain) { budget->remain -= size; return 1; }
- if(budget->chance == 0) { budget->count += size; return 0; }
- budget->remain += budget->incval - size;
- budget->chance -= 1;
- return 1;
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-static inline
-void
-tr_partition(const int *ISAd,
- int *first, int *middle, int *last,
- int **pa, int **pb, int v) {
- int *a, *b, *c, *d, *e, *f;
- int t, s;
- int x = 0;
-
- for(b = middle - 1; (++b < last) && ((x = ISAd[*b]) == v);) { }
- if(((a = b) < last) && (x < v)) {
- for(; (++b < last) && ((x = ISAd[*b]) <= v);) {
- if(x == v) { SWAP(*b, *a); ++a; }
- }
- }
- for(c = last; (b < --c) && ((x = ISAd[*c]) == v);) { }
- if((b < (d = c)) && (x > v)) {
- for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
- if(x == v) { SWAP(*c, *d); --d; }
- }
- }
- for(; b < c;) {
- SWAP(*b, *c);
- for(; (++b < c) && ((x = ISAd[*b]) <= v);) {
- if(x == v) { SWAP(*b, *a); ++a; }
- }
- for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
- if(x == v) { SWAP(*c, *d); --d; }
- }
- }
-
- if(a <= d) {
- c = b - 1;
- if((s = a - first) > (t = b - a)) { s = t; }
- for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
- if((s = d - c) > (t = last - d - 1)) { s = t; }
- for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
- first += (b - a), last -= (d - c);
- }
- *pa = first, *pb = last;
-}
-
-static
-void
-tr_copy(int *ISA, const int *SA,
- int *first, int *a, int *b, int *last,
- int depth) {
- /* sort suffixes of middle partition
- by using sorted order of suffixes of left and right partition. */
- int *c, *d, *e;
- int s, v;
-
- v = b - SA - 1;
- for(c = first, d = a - 1; c <= d; ++c) {
- if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
- *++d = s;
- ISA[s] = d - SA;
- }
- }
- for(c = last - 1, e = d + 1, d = b; e < d; --c) {
- if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
- *--d = s;
- ISA[s] = d - SA;
- }
- }
-}
-
-static
-void
-tr_partialcopy(int *ISA, const int *SA,
- int *first, int *a, int *b, int *last,
- int depth) {
- int *c, *d, *e;
- int s, v;
- int rank, lastrank, newrank = -1;
-
- v = b - SA - 1;
- lastrank = -1;
- for(c = first, d = a - 1; c <= d; ++c) {
- if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
- *++d = s;
- rank = ISA[s + depth];
- if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
- ISA[s] = newrank;
- }
- }
-
- lastrank = -1;
- for(e = d; first <= e; --e) {
- rank = ISA[*e];
- if(lastrank != rank) { lastrank = rank; newrank = e - SA; }
- if(newrank != rank) { ISA[*e] = newrank; }
- }
-
- lastrank = -1;
- for(c = last - 1, e = d + 1, d = b; e < d; --c) {
- if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
- *--d = s;
- rank = ISA[s + depth];
- if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
- ISA[s] = newrank;
- }
- }
-}
-
-static
-void
-tr_introsort(int *ISA, const int *ISAd,
- int *SA, int *first, int *last,
- trbudget_t *budget) {
-#define STACK_SIZE TR_STACKSIZE
- struct { const int *a; int *b, *c; int d, e; }stack[STACK_SIZE];
- int *a, *b, *c;
- int t;
- int v, x = 0;
- int incr = ISAd - ISA;
- int limit, next;
- int ssize, trlink = -1;
-
- for(ssize = 0, limit = tr_ilg(last - first);;) {
-
- if(limit < 0) {
- if(limit == -1) {
- /* tandem repeat partition */
- tr_partition(ISAd - incr, first, first, last, &a, &b, last - SA - 1);
-
- /* update ranks */
- if(a < last) {
- for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
- }
- if(b < last) {
- for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; }
- }
-
- /* push */
- if(1 < (b - a)) {
- STACK_PUSH5(NULL, a, b, 0, 0);
- STACK_PUSH5(ISAd - incr, first, last, -2, trlink);
- trlink = ssize - 2;
- }
- if((a - first) <= (last - b)) {
- if(1 < (a - first)) {
- STACK_PUSH5(ISAd, b, last, tr_ilg(last - b), trlink);
- last = a, limit = tr_ilg(a - first);
- } else if(1 < (last - b)) {
- first = b, limit = tr_ilg(last - b);
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- } else {
- if(1 < (last - b)) {
- STACK_PUSH5(ISAd, first, a, tr_ilg(a - first), trlink);
- first = b, limit = tr_ilg(last - b);
- } else if(1 < (a - first)) {
- last = a, limit = tr_ilg(a - first);
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- }
- } else if(limit == -2) {
- /* tandem repeat copy */
- a = stack[--ssize].b, b = stack[ssize].c;
- if(stack[ssize].d == 0) {
- tr_copy(ISA, SA, first, a, b, last, ISAd - ISA);
- } else {
- if(0 <= trlink) { stack[trlink].d = -1; }
- tr_partialcopy(ISA, SA, first, a, b, last, ISAd - ISA);
- }
- STACK_POP5(ISAd, first, last, limit, trlink);
- } else {
- /* sorted partition */
- if(0 <= *first) {
- a = first;
- do { ISA[*a] = a - SA; } while((++a < last) && (0 <= *a));
- first = a;
- }
- if(first < last) {
- a = first; do { *a = ~*a; } while(*++a < 0);
- next = (ISA[*a] != ISAd[*a]) ? tr_ilg(a - first + 1) : -1;
- if(++a < last) { for(b = first, v = a - SA - 1; b < a; ++b) { ISA[*b] = v; } }
-
- /* push */
- if(trbudget_check(budget, a - first)) {
- if((a - first) <= (last - a)) {
- STACK_PUSH5(ISAd, a, last, -3, trlink);
- ISAd += incr, last = a, limit = next;
- } else {
- if(1 < (last - a)) {
- STACK_PUSH5(ISAd + incr, first, a, next, trlink);
- first = a, limit = -3;
- } else {
- ISAd += incr, last = a, limit = next;
- }
- }
- } else {
- if(0 <= trlink) { stack[trlink].d = -1; }
- if(1 < (last - a)) {
- first = a, limit = -3;
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- }
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- }
- continue;
- }
-
- if((last - first) <= TR_INSERTIONSORT_THRESHOLD) {
- tr_insertionsort(ISAd, first, last);
- limit = -3;
- continue;
- }
-
- if(limit-- == 0) {
- tr_heapsort(ISAd, first, last - first);
- for(a = last - 1; first < a; a = b) {
- for(x = ISAd[*a], b = a - 1; (first <= b) && (ISAd[*b] == x); --b) { *b = ~*b; }
- }
- limit = -3;
- continue;
- }
-
- /* choose pivot */
- a = tr_pivot(ISAd, first, last);
- SWAP(*first, *a);
- v = ISAd[*first];
-
- /* partition */
- tr_partition(ISAd, first, first + 1, last, &a, &b, v);
- if((last - first) != (b - a)) {
- next = (ISA[*a] != v) ? tr_ilg(b - a) : -1;
-
- /* update ranks */
- for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
- if(b < last) { for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; } }
-
- /* push */
- if((1 < (b - a)) && (trbudget_check(budget, b - a))) {
- if((a - first) <= (last - b)) {
- if((last - b) <= (b - a)) {
- if(1 < (a - first)) {
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- last = a;
- } else if(1 < (last - b)) {
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- first = b;
- } else {
- ISAd += incr, first = a, last = b, limit = next;
- }
- } else if((a - first) <= (b - a)) {
- if(1 < (a - first)) {
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- last = a;
- } else {
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- ISAd += incr, first = a, last = b, limit = next;
- }
- } else {
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- ISAd += incr, first = a, last = b, limit = next;
- }
- } else {
- if((a - first) <= (b - a)) {
- if(1 < (last - b)) {
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- first = b;
- } else if(1 < (a - first)) {
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- last = a;
- } else {
- ISAd += incr, first = a, last = b, limit = next;
- }
- } else if((last - b) <= (b - a)) {
- if(1 < (last - b)) {
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- STACK_PUSH5(ISAd + incr, a, b, next, trlink);
- first = b;
- } else {
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- ISAd += incr, first = a, last = b, limit = next;
- }
- } else {
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- ISAd += incr, first = a, last = b, limit = next;
- }
- }
- } else {
- if((1 < (b - a)) && (0 <= trlink)) { stack[trlink].d = -1; }
- if((a - first) <= (last - b)) {
- if(1 < (a - first)) {
- STACK_PUSH5(ISAd, b, last, limit, trlink);
- last = a;
- } else if(1 < (last - b)) {
- first = b;
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- } else {
- if(1 < (last - b)) {
- STACK_PUSH5(ISAd, first, a, limit, trlink);
- first = b;
- } else if(1 < (a - first)) {
- last = a;
- } else {
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- }
- }
- } else {
- if(trbudget_check(budget, last - first)) {
- limit = tr_ilg(last - first), ISAd += incr;
- } else {
- if(0 <= trlink) { stack[trlink].d = -1; }
- STACK_POP5(ISAd, first, last, limit, trlink);
- }
- }
- }
-#undef STACK_SIZE
-}
-
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Tandem repeat sort */
-static
-void
-trsort(int *ISA, int *SA, int n, int depth) {
- int *ISAd;
- int *first, *last;
- trbudget_t budget;
- int t, skip, unsorted;
-
- trbudget_init(&budget, tr_ilg(n) * 2 / 3, n);
-/* trbudget_init(&budget, tr_ilg(n) * 3 / 4, n); */
- for(ISAd = ISA + depth; -n < *SA; ISAd += ISAd - ISA) {
- first = SA;
- skip = 0;
- unsorted = 0;
- do {
- if((t = *first) < 0) { first -= t; skip += t; }
- else {
- if(skip != 0) { *(first + skip) = skip; skip = 0; }
- last = SA + ISA[t] + 1;
- if(1 < (last - first)) {
- budget.count = 0;
- tr_introsort(ISA, ISAd, SA, first, last, &budget);
- if(budget.count != 0) { unsorted += budget.count; }
- else { skip = first - last; }
- } else if((last - first) == 1) {
- skip = -1;
- }
- first = last;
- }
- } while(first < (SA + n));
- if(skip != 0) { *(first + skip) = skip; }
- if(unsorted == 0) { break; }
- }
-}
-
-
-/*---------------------------------------------------------------------------*/
-
-/* Sorts suffixes of type B*. */
-static
-int
-sort_typeBstar(const unsigned char *T, int *SA,
- int *bucket_A, int *bucket_B,
- int n) {
- int *PAb, *ISAb, *buf;
- int i, j, k, t, m, bufsize;
- int c0, c1;
-
- /* Initialize bucket arrays. */
- for(i = 0; i < BUCKET_A_SIZE; ++i) { bucket_A[i] = 0; }
- for(i = 0; i < BUCKET_B_SIZE; ++i) { bucket_B[i] = 0; }
-
- /* Count the number of occurrences of the first one or two characters of each
- type A, B and B* suffix. Moreover, store the beginning position of all
- type B* suffixes into the array SA. */
- for(i = n - 1, m = n, c0 = T[n - 1]; 0 <= i;) {
- /* type A suffix. */
- do { ++BUCKET_A(c1 = c0); } while((0 <= --i) && ((c0 = T[i]) >= c1));
- if(0 <= i) {
- /* type B* suffix. */
- ++BUCKET_BSTAR(c0, c1);
- SA[--m] = i;
- /* type B suffix. */
- for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) {
- ++BUCKET_B(c0, c1);
- }
- }
- }
- m = n - m;
-/*
-note:
- A type B* suffix is lexicographically smaller than a type B suffix that
- begins with the same first two characters.
-*/
-
- /* Calculate the index of start/end point of each bucket. */
- for(c0 = 0, i = 0, j = 0; c0 < ALPHABET_SIZE; ++c0) {
- t = i + BUCKET_A(c0);
- BUCKET_A(c0) = i + j; /* start point */
- i = t + BUCKET_B(c0, c0);
- for(c1 = c0 + 1; c1 < ALPHABET_SIZE; ++c1) {
- j += BUCKET_BSTAR(c0, c1);
- BUCKET_BSTAR(c0, c1) = j; /* end point */
- i += BUCKET_B(c0, c1);
- }
- }
-
- if(0 < m) {
- /* Sort the type B* suffixes by their first two characters. */
- PAb = SA + n - m; ISAb = SA + m;
- for(i = m - 2; 0 <= i; --i) {
- t = PAb[i], c0 = T[t], c1 = T[t + 1];
- SA[--BUCKET_BSTAR(c0, c1)] = i;
- }
- t = PAb[m - 1], c0 = T[t], c1 = T[t + 1];
- SA[--BUCKET_BSTAR(c0, c1)] = m - 1;
-
- /* Sort the type B* substrings using sssort. */
- buf = SA + m, bufsize = n - (2 * m);
- for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
- for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
- i = BUCKET_BSTAR(c0, c1);
- if(1 < (j - i)) {
- sssort(T, PAb, SA + i, SA + j,
- buf, bufsize, 2, n, *(SA + i) == (m - 1));
- }
- }
- }
-
- /* Compute ranks of type B* substrings. */
- for(i = m - 1; 0 <= i; --i) {
- if(0 <= SA[i]) {
- j = i;
- do { ISAb[SA[i]] = i; } while((0 <= --i) && (0 <= SA[i]));
- SA[i + 1] = i - j;
- if(i <= 0) { break; }
- }
- j = i;
- do { ISAb[SA[i] = ~SA[i]] = j; } while(SA[--i] < 0);
- ISAb[SA[i]] = j;
- }
-
- /* Construct the inverse suffix array of type B* suffixes using trsort. */
- trsort(ISAb, SA, m, 1);
-
- /* Set the sorted order of tyoe B* suffixes. */
- for(i = n - 1, j = m, c0 = T[n - 1]; 0 <= i;) {
- for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) >= c1); --i, c1 = c0) { }
- if(0 <= i) {
- t = i;
- for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) { }
- SA[ISAb[--j]] = ((t == 0) || (1 < (t - i))) ? t : ~t;
- }
- }
-
- /* Calculate the index of start/end point of each bucket. */
- BUCKET_B(ALPHABET_SIZE - 1, ALPHABET_SIZE - 1) = n; /* end point */
- for(c0 = ALPHABET_SIZE - 2, k = m - 1; 0 <= c0; --c0) {
- i = BUCKET_A(c0 + 1) - 1;
- for(c1 = ALPHABET_SIZE - 1; c0 < c1; --c1) {
- t = i - BUCKET_B(c0, c1);
- BUCKET_B(c0, c1) = i; /* end point */
-
- /* Move all type B* suffixes to the correct position. */
- for(i = t, j = BUCKET_BSTAR(c0, c1);
- j <= k;
- --i, --k) { SA[i] = SA[k]; }
- }
- BUCKET_BSTAR(c0, c0 + 1) = i - BUCKET_B(c0, c0) + 1; /* start point */
- BUCKET_B(c0, c0) = i; /* end point */
- }
- }
-
- return m;
-}
-
-/* Constructs the suffix array by using the sorted order of type B* suffixes. */
-static
-void
-construct_SA(const unsigned char *T, int *SA,
- int *bucket_A, int *bucket_B,
- int n, int m) {
- int *i, *j, *k;
- int s;
- int c0, c1, c2;
-
- if(0 < m) {
- /* Construct the sorted order of type B suffixes by using
- the sorted order of type B* suffixes. */
- for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
- /* Scan the suffix array from right to left. */
- for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
- j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
- i <= j;
- --j) {
- if(0 < (s = *j)) {
- assert(T[s] == c1);
- assert(((s + 1) < n) && (T[s] <= T[s + 1]));
- assert(T[s - 1] <= T[s]);
- *j = ~s;
- c0 = T[--s];
- if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
- if(c0 != c2) {
- if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
- k = SA + BUCKET_B(c2 = c0, c1);
- }
- assert(k < j);
- *k-- = s;
- } else {
- assert(((s == 0) && (T[s] == c1)) || (s < 0));
- *j = ~s;
- }
- }
- }
- }
-
- /* Construct the suffix array by using
- the sorted order of type B suffixes. */
- k = SA + BUCKET_A(c2 = T[n - 1]);
- *k++ = (T[n - 2] < c2) ? ~(n - 1) : (n - 1);
- /* Scan the suffix array from left to right. */
- for(i = SA, j = SA + n; i < j; ++i) {
- if(0 < (s = *i)) {
- assert(T[s - 1] >= T[s]);
- c0 = T[--s];
- if((s == 0) || (T[s - 1] < c0)) { s = ~s; }
- if(c0 != c2) {
- BUCKET_A(c2) = k - SA;
- k = SA + BUCKET_A(c2 = c0);
- }
- assert(i < k);
- *k++ = s;
- } else {
- assert(s < 0);
- *i = ~s;
- }
- }
-}
-
-/*---------------------------------------------------------------------------*/
-
-/*- Function -*/
-
-/* XXX Modified from original: use provided temporary space instead of
- * allocating it. */
-void
-divsufsort(const unsigned char *T, int *SA, int n,
- int *bucket_A, int *bucket_B)
-{
- int m;
-
- switch (n) {
- case 0:
- break;
-
- case 1:
- SA[0] = 0;
- break;
-
- case 2:
- m = (T[0] < T[1]);
- SA[m ^ 1] = 0;
- SA[m] = 1;
- break;
-
- default:
- m = sort_typeBstar(T, SA, bucket_A, bucket_B, n);
- construct_SA(T, SA, bucket_A, bucket_B, n, m);
- break;
- }
-}
git://wimlib.net / wimlib / commitdiff